Laboratories

Anatomy and Cell Biology

KEYWORDS

  • Brain development
  • Morphogenesis
  • Cell and tissue dynamics
  • Imaging
  • Neural stem cells
  • Neurons
  • Microglia
  • Mechanochemical coupling
  • Neuroimmune interactions

HEAD

MIYATA Takaki

Professor

LAB MEMBER

Faculty Position Researchers
HATTORI Yuki Associate Professor
SHINODA Tomoyasu Assistant Professor
KAWAUE Takumi Designated Assistant Professor
SHIMAMURA Tsukasa Designated Assistant Professor

CONTACT

Email iga-ryu◎t.mail.nagoya-u.ac.jp (Please send a message after replacing "◎" mark with "@" mark. )
HP Private Page

OUTLINE

We study the mechanisms of brain formation, or how the brain is constructed. The search for the principles of brain formation is progressing globally, and its medical significance includes: (1) a thorough understanding of brain structure, which is essential for understanding various brain functions, is greatly aided by a thorough understanding of the brain's origins; (2) it can elucidate the pathological mechanisms of brain diseases that are found from birth through adulthood but their origins are thought to lie in the fetal period; and (3) it can provide a biomimetic basis for applied approaches using stem cells and organoids.

Meanwhile, the process of brain formation is also a fascinating subject for interdisciplinary efforts seeking biological knowledge. The brain's primordium, where ordered tissue structures are generated by the assembly of cells performing diverse behaviors, reveals new facets every day through interdisciplinary perspectives and approaches.

With these significance in mind, we are conducting fundamental research on the mechanisms of central nervous system development.

RESEARCH PROJECTS

We are currently working on several projects that are interrelated but have different objectives, target cells, and brain regions.

1. Mechanically asking how the brain wall thickens:

The brain primordium is formed from a cylindrical, tubular structure that surrounds a cavity called the ""ventricle."" The formation and growth of each of these regions progresses as the walls of the presumptive regions, such as the cerebrum and midbrain, thicken, but there appears to be variation in the way the thickness increases, with one of two adjacent regions thickening with its inner (ventricle-facing) surface concave, while the other convex.. Shinoda/Miyata team is mechanically questioning how the shape of the brain primordium is established at every moment, how its thickness increases, and how the contrasting curvatures (concave vs. convex) arise at the inner suarface of the wall. (Shinoda, Miyata, graduate students)

2. Exploring the mechanisms and significance of brain macrophage colonization during embryogenesis:

Brain macrophages, including microglia—well known in the adult brain for their roles in phagocytosis, tissue clearance, and the modulation of neural circuits—are thought to enter the developing brain at multiple developmental stages and through distinct routes. Hattori team investigates the mechanisms underlying this colonization process and its functional significance. A deeper understanding of these processes is expected to provide insights into how maternal inflammation may influence fetal brain development. We conduct an integrated analysis of the interactions between brain macrophages and other cells (neural lineage cells, blood vessels, meninges, etc.). (Hattori, Shimamura, JSPS PD, graduate students)

3. Exploring the roles of nuclear envelope components in neuronal differentiation and migration:

The cell nucleus is supported on its inner surface by a structure known as the nuclear lamina, which consists of specialized scaffold molecules that maintain nuclear shape and mechanical strength. During embryonic development of the cerebral cortex, the composition of these nuclear envelope–associated scaffold molecules undergoes marked changes as neurons migrate, differentiate, and mature. Changes in nuclear envelope components are known to result not only in alterations in nuclear stiffness but also in differences in the chromatin regions that associate with the nuclear envelope. We focuses on these transitional phases of nuclear envelope composition, aiming to elucidate the physical effects of changes in nuclear stiffness on neuronal migration, as well as the dynamic changes in gene expression that accompany shifts in chromatin-binding domains. (Kawaue, Graduate Students)

BIBLIOGRAPHY

2025
  1. Embryonic cerebrospinal fluid pressure in fetal mice in utero: External factors pressurize the intraventricular space. Tsujikawa K*, Miyata T*. Dev. Dyn. (2025) 06 June https://doi.org/10.1002/dvdy.70047
2024
  1. Quantitative in toto live imaging analysis of apical nuclear migration in the mouse telencephalic neuroepithelium. Shimamura T*, Miyata T*. Dev. Growth Differ., 66, 462–474 (2024).
  2. A novel preparation for histological analyses of intraventricular macrophages in the embryonic brain. Murayama F, Asai H, Patra AK, Wake H, Miyata T, Hattori1 Y*. Dev. Growth. Differ., 66, 329–337 (2024).
2023
  1. Mechanical and physical interactions involving neocortical progenitor cells. T Miyata*. Neocortical Neurogenesis in Development and Evolution, 119-136 (2023)
  2. CD206+ macrophages transventricularly infiltrate the early embryonic cerebral wall to differentiate into microglia. Hattori Y*, Kato D, Murayama F, Koike S, Asai H, Yamasaki A, Naito Y, Kawaguchi A, Konishi H, Prinz M, Masuda T, Wake H, Miyata T. Cell Rep 42, 112092 (2023)
  3. Age-associated reduction of nuclear shape dynamics in excitatory neurons of the visual cortex. Frey T, Murakami T, Maki K, Kawaue T, Tani N, Sugai A, Nakazawa N, Ishiguro KI, Adachi T, Kengaku M, Ohki K, Gotoh Y, Kishi Y*. Aging Cell. 22:e13925 (2023).
  4. Inhomogeneous mechanotransduction defines the spatial pattern of apoptosis-induced compensatory proliferation. Kawaue T, Yow I, Pan Y, Le AP, Lou Y, Loberas M, Shagirov M, Teng X, Prost J, Hiraiwa T, Ladoux B, Toyama Y*. Dev. Cell. 58:267-277.e5 (2023).
2022
  1. Embryonic Pericytes Promote Microglial Homeostasis and Their Effects on Neural Progenitors in the Developing Cerebral Cortex. Hattori Y*, Itoh H, Tsugawa Y, Nishida Y, Kurata K, Uemura A, Miyata T. J. Neurosci., 42, 362–373 (2022).
  2. Interfacial friction and substrate deformation mediate long-range signal propagation in tissues. Lou Y*, Kawaue T, Yow I, Toyama Y, Prost J, Hiraiwa T*. Biomech Model Mechanobiol. 21, 1511-1530 (2022).
  3. Developmentally interdependent stretcher‐compressor relationship between the embryonic brain and the surrounding scalp in the preosteogenic head. Tsujikawa K, Saito K, Nagasaka A, Miyata T*. Dev.Dyn. 251, 1107-1122 (2022)
2021
  1. Comparison of the mechanical properties between the convex and concave inner/apical surfaces of the developing cerebrum. Nagasaka A*, Miyata T. Front. Cell Dev. Biol. 9, 702068 (2021)
2020
  1. Two-photon microscopic observation of cell-production dynamics in the developing mammalian neocortex in utero. Kawasoe R, Shinoda T, Hattori Y, Nakagawa M, Pham TQ, Tanaka Y, Sagou K, Saito K, Katsuki S, Kotani T, Sano A, Fujimori T, Miyata T* .Dev Growth Differ. 62, 118-128 (2020)
  2. Transient microglial absence assists postmigratory cortical neurons in proper differentiation. Hattori Y*, Naito Y, Tsugawa Y, Nonaka S, Wake H, Nagasawa T, Kawaguchi A, Miyata T*. Nat. Commun., 11, 1631 (2020).
2019
  1. Dorsal-to-Ventral Cortical Expansion Is Physically Primed by Ventral Streaming of Early Embryonic Preplate Neurons. Saito K, Okamoto M, Watanabe Y, Noguchi N, Nagasaka A, Nishina A, Shinoda T, Sakakibara A, Miyata T*. Cell Rep. 29, P1555-1567 (2019)
  2. Lzts1 controls both neuronal delamination and outer radial glial-like cell generation during mammalian cerebral development. Kawaue T, Shitamukai A, Nagasaka A, Tsunekawa Y, Shinoda T, Saito K, Terada R, Bilgic M, Miyata T, Matsuzaki F*, Kawaguchi A*. Nat. commun. 10, 2780 (2019)
2018
  1. Embryonic neocortical microglia express toll-like receptor 9 and respond to plasmid dna injected into the ventricle: technical considerations regarding microglial distribution in electroporated brain walls. Hattori Y*, Miyata T. eNeuro 5 (6) doi.org/10.1523/ENEURO.0312-18.2018.(2018)
  2. Microglia extensively survey the developing cortex via the CXCL12/CXCR4 system to help neural progenitors to acquire differentiated properties. Hattori Y*, Miyata T*. Genes Cells 23 (10), 915-922 (2018)
  3. Differentiating cells mechanically limit the interkinetic nuclear migration of progenitor cells to secure apical cytogenesis. Watanabe Y, Kawaue T*, Miyata T*. Development 145 (14), dev16288314 (2018)
  4. Elasticity-based boosting of neuroepithelial nucleokinesis via indirect energy transfer from mother to daughter. Shinoda T*, Nagasaka A, Inoue Y, Higuchi R, Minami Y, Kato K, Suzuki M, Kondo T, Kawaue T, Saito K, Ueno N, Fukazawa Y, Nagayama M, Miura T, Adachi T, Miyata T*. PLoS Biol. 16 (4), e2004426 (2018)
2013
  1. TAG-1–assisted progenitor elongation streamlines nuclear migration to optimize subapical crowding. Okamoto M, Namba T, Shinoda T, Kondo T, Watanabe T, Inoue Y, Takeuchi K, Enomoto Y, Ota K, Oda K, Wada Y, Sagou K, Saito K, Sakakibara A, Kawaguchi A, Nakajima K, Adachi T, Fujimori T, Ueda M, Hayashi S, Kaibuchi K, Miyata T. Nat. Neurosci. 16, 1556-1566, 2013

Back to top of page